Mapping and QTL Resources

CAPSId
http://bbc.botany.utoronto.ca/capsid/
An automated CAPS marker based genotyping system

dCAPS finder
http://helix.wustl.edu/dcaps/dcaps.html
Programme to design PCR primers for dCAPs markers

MASC SNP Database
http://www2.mpiz-koeln.mpg.de/masc/search_masc_snps.php
Search for SNP from 13 Arabidopsis ecotypes, Arabis lyrata and Boechera drummondii.

Genetic Analysis Software
http://linkage.rockefeller.edu/soft/
A comprehensive listing of genetic analysis software held at Rockefeller

Marker Tracker
http://bbc.botany.utoronto.ca/markertracker/index.spy
Contains computationally generated CAPS markers across 96 accessions from Arabidopsis

Natural
http://www.dpw.wau.nl/natural/
Consortium looking into quantitative traits in Arabidopsis. Resources available via this site include a range of RILs (using Columbia as the reference), along with genomic and computational tools for QTL analysis

NASC Ecotype Search
http://www.arabidopsis.info/EcoForm
Searchable database of ecotypes

MSQT, MULTIPLE SNP QUERY TOOL
http://msqt.weigelworld.org
Search for SNPS between arbitrary groups of ecotypes/accessions

POLYMORPH
http://polymorph.weigelworld.org/cgi-bin/retrieve_snp.cgi

TAIR Ecotype Search
http://www.arabidopsis.org/servlets/Search?action=new_search&type=ecotype
Searchable database of ecotypes and Arabidopsis relatives

TAIR Marker Search
http://www.arabidopsis.org/servlets/Search?action=new_search&type=marker
Search for markers in chromosomal region of interest

TAIR Polymorphism Search
http://www.arabidopsis.org/servlets/Search?action=new_search&type=polyallele
Search for SNPs in chromosomal region of interest