Genome Databases
Agrikola
http://www.agrikola.org
A genome wide resource for RNAi in Arabidopsis. The Arabidopsis Genomic RNAi Knock-down Line Analysis project aimed to construct 4000-5000 gene specific RNAi constructs in order to help researchers to produce mutants in any gene of interest. Amplicons, entry clones and seeds generated by this project are available at NASC.
AtEnsembl, Arabidopsis Ensembl Genome Browser
http://atensembl.arabidopsis.info/
This genome browser is produced by NASC and aims to provide the most accurate and complete information about the Arabidopsis genome by providing both TIGR and MIPS annotations.
Genome Cluster Database (GCD)
http://bioweb.ucr.edu/databaseWeb/index.jsp
GCD is a database for genome-wide sequence family mining in Arabidopsis and Rice
MAtDB MIPS Arabidopsis Thaliana database
http://mips.gsf.de/proj/thal/db/index.html
A genome browser that contains data from the Arabidopsis Genome Initiative (AGI) complied, analysed, annotated and stored at MIPS.
PENDANT
http://pedant.gsf.de/index.jsp
The pedant genome database provides exhaustive automatic analysis of genomic sequences by a large variety of bioinformatics tools.
PlantGDB, Plant Genome Database
http://www.plantgdb.org/
Contains resources for plant comparative genomics.
RIKEN Resource Centre
http://www.brc.riken.jp/lab/epd/Eng/
Contains the following resources
Riken Transposon and T-DNA tagged lines
SASSC Sendai Arabidopsis Seed Stock Centre Collection
RIKEN Arabidopsis full-length cDNA (RAFL) clones
SABRE Systematic consolidation of Arabidopsis and other Botanical REsource
SIGNAL, Salk Institute Genomic Analysis Laboratory
http://signal.salk.edu/index.html
Excellent resource containing
Insertion sequence database
Tiling Array data
ORFeome collection
Methylome
SFP Database
Perlgen Sequencing Data
