Microarray Datasets
Data Repositories
Array Express
http://www.ebi.ac.uk/microarray-as/aer/?#ae-main
Public repository for microarray data
GEO
http://www.ncbi.nlm.nih.gov/geo/
GEO is a gene expression and hybridization array data repository, as well as an online resource for the retrieval of gene expression data from any organism or artificial source
NASCArrays
http://affymetrix.arabidopsis.info/narrays/experimentbrowse.pl
Database of all microarray experiments carried out at the NASC facilities. Accepts data donations from the community.
TAIR Microarray Search
http://www.arabidopsis.org/servlets/Search?type=expr&search_action=new_search
Database of Numerous Arabidopsis Microarray experiments, stopped excepting new data in 2005
Online Datasets
AREX Arabidopsis Gene Expression Database
http://www.arexdb.org/
The Arabidopsis Gene Expression Database stores genome-wide (Affymetrix microarray) and gene-specific (in situ, GFP-reporter, etc.) Arabidopsis spatial gene expression data.
AtGen Express
http://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp
A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. Contains data from a wide range of conditions and developmental stages.
ColdArrayDB
http://cold.stanford.edu/cgi-bin/data.cgi
Database that contains global expression profiles of Arabidopsis and tomato genes in response to cold temperatures.
OSMID
http://www.osmid.org/
Osmotic Stress Microarray Information Database contains the results of approximately 100 microarray experiments performed at the University of Arizona as part of the NSF-funded project.
Data Standards
MIAME
http://www.mged.org/Workgroups/MIAME/miame.html
Minimum Information about a microarray experiment that is needed for unambiguous interpretation and reproducibility.
MIAME/Plant White Paper
http://www.arabidopsis.org/portals/expression/microarray/MIAME-plant_Dec2005.pdf
Standards for describing plant microarray experiments and samples.
