Microarray Tools and Resources

Data Mining Tools

ACT, Arabidopsis Co-expression Tools
http://www.arabidopsis.leeds.ac.uk/act/
This site supplies a number of tools for analysing microarray data

Arabidopsis e-FP Browser
http://bbc.botany.utoronto.ca/~bvinegar/cgi-bin/efp/efpWeb.cgi
The Arabidopsis electronic fluorescent protein browser; translates the developmental expression data generated by the AtGenExpress project in to a pictorial view. Usesr can either view where their gene is expressed or compare its pattern of expression to another locus of interest.

Arabidopsis Tillling Array Resource
http://signal.salk.edu/cgi-bin/atta
This site provides the transcription profile of the Arabidopsis genome (coding and non coding). Data from a range of tissue types and conditions are shown in a genome browser format along with the expression profiles for both DNA strands. Numerous other annotations such as the position of micro and small RNAs are also provided.

Genevestigator
https://www.genevestigator.ethz.ch/
A user friendly site containing a wide range of tools for analysing and querying a large database of microarray data from sources including NASC, AtGenExpress, FCGZ and the Gruissiem lab.

GLAMA
http://www.brc.dcs.gla.ac.uk/systems/glama/
The Functional Genomics Facility and the Bioinformatics Research Centre at the University of Glasgow have a set of microarray analysis tools available for researchers to use.

NASC Arrays
http://affymetrix.arabidopsis.info/narrays/experimentbrowse.pl
Contains all Arabidopsis microarray data generated by NASC along with data mining tools such as spot history and gene swinger.

RTSF Microarray Viewer
Displays the Arabidopsis developmental microarray data from the AtGenExpress Consortium.
http://rtsf.msu.edu/cgi-bin/amv/index.cgi

Data Analysis Tools

Microarray Resources at TAIR
List of numerous tools for microarray data analysis
http://www.arabidopsis.org/portals/expression/microarray/microarraySoftwareV2.jsp