Promoter and Regulatory Elements
Database of Arabidopsis Transcription Factors (DATF)
http://datf.cbi.pku.edu.cn/
DATF – Collects all Arabidopsis transcription factors and classifies them into families.
Database of Orthologous Promoters
http://doop.abc.hu/
A Database of orthologous promoter clusters from Homo sapiens, Arabidopsis and others.
Plant cis-Acting Regulatory Elements (Plant CARE)
http://bioinformatics.psb.ugent.be/webtools/plantcare/html/
A database of plant regulatory elements along with numerous tools for in silico analysis.
PlantProm DB
http://www.softberry.com/berry.phtml?topic=plantprom&group=data&subgroup=plantprom
PlantProm DB is an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species.
Plant cis-Acting Regulatory DNA elements (Place)
http://www.dna.affrc.go.jp/PLACE/
PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, all from previously published reports. It covers vascular plants and some Chlamydomonas.
Plant Transcription Factor Database (PTFB)
http://plntfdb.bio.uni-potsdam.de/v1.0/
PTFDB is an integrative plant transcription factor database that provides a web interface to access large (close to complete) sets of transcription factors of several plant species, currently encompassing Arabidopsis thaliana (thale cress), Populus trichocarpa (poplar), Oryza sativa (rice), Chlamydomonas reinhardtii and Ostreococcus tauri.
