Proteomic Tools and Resources
Arabidopsis Coiled - Coil Database
http://www.coiled-coil.org/arabidopsis/
The ARABI-COIL Database is a searchable database of all Arabidopsis proteins containing long stretches of coiled-coil domains.
Ara-Cyc
http://www.arabidopsis.org/biocyc/index.jsp
TAIR package that allows visualisation of biochemical pathways in Arabidopsis thaliana.
BRENDA
http://www.brenda-enzymes.info/
Comprehensive enzyme information edited from the scientific literature for many proteins across a range of organisms including Arabidopsis.
CESG
http://www.uwstructuralgenomics.org/
The Center for Eukaryotic Structural Genomics aims to increase the production of available 3-D protein structures. As part of this project CESG has produced a large number of Arabidopsis ORF Gateway clones, protein expression clones, small amounts of purified protein and over 40 3-D structures. Information on all ORFs studied to date are available by BLAST search. Protocols for producing recombinant proteins are also available.
ExPASy
http://www.expasy.ch/
Diverse range of proteomics analysis software.
IntAct of EMBL and EBI
http://www.ebi.ac.uk/intact/site/index.jsf
Protein-Protein Interaction Database from a range of organisms including Arabidopsis.
Plant Specific Database
http://genomics.msu.edu/plant_specific/index.html
List of Arabidopsis proteins that are plant specific.
Plants P
http://plantsp.genomics.purdue.edu/plantsp/html/families.html
List of kinases and phosphatases in plants.
Plant Probes
http://www.plantprobes.net/
Antibodies of cell wall glycans developed by the Paul Knox lab at the University of Leeds.
Protein Structure
http://restools.sdsc.edu/biotools/biotools9.html
Numerous Databases and analysis tools of protein 2D/3D structures.
Proteome Resources at TAIR
http://www.arabidopsis.org/portals/proteome/proteome_tool.jsp
List of numerous tools for protein data analysis.
UniProt Knowledgebase
http://www.ebi.uniprot.org/index.shtml
Comprehensive collection of protein sequence information.
Proteomic Standards
Proteomic Standard Initiative
http://www.psidev.info/
The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification.
